Glyma10g28830 - SoyBase

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Report for Sequence Feature Glyma10g28830

Feature Type:	gene_model
Chromosome:	Gm10
Start:	37718442
stop:	37720608
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g28830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56423	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr1:21129075-21130558 FORWARD LENGTH=270	SoyBase	E_val: 1.00E-111	ISS
UniRef100_C6TE96	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TE96_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g28830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28830

Paralog	Evidence	Comments
Glyma20g23000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g147100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g28830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g28830

Limit To All Plant Sequences

>Glyma10g28830.1   sequence type=CDS   gene model=Glyma10g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCGAGAGTAGGAGGCTTCATTTGCTCATCTCCGTGGTTGCCATCATTGCTCTTAGCTTCACAGCTGAAAAATGCAGGGAACTTGTTGGGGAGGAGGGGTCATCCCAGAGTGGAAAGTTTACAATCTTAAATTGCTTTGATATGGGTTCTGGAACTGTAGCATGTGCTGTCAAGGAAGGTGTGAAGCTCTATTTTTACAATATTAGGTCTTCTCATGCTGAAAGAGCGAGGAGTCAAGCAATTGAGTCTGCCCTCGTTGATGCTGTTACTCAGGGGATGTCCCCAACAGATTCAGCAAAACATGCACAGAAAGAAGGTAAGAAGGCAGCAAAATTGGCTTCCCGTCAAGCCAAGCGGATTATAGGTCCCATCATTTCCTCTGGATGGGACTTTTTTGAAGCTATTTACTATGGTGGTACTGTCACAGAAGGGTTCCTTAGAGGCACTGGTACTTTGTTTGGTACTTATGCTGGAGGGTTCCTTGGGGAGCAAAGGCTTGGTAGAATTGGCTATCTTCTTGGAAGTCACCTGGGCAGTTGGGTTGGTGGTAGAATAGGATTAATGGTTTATGATGTGGTCAATGGAGTGCATTTGTTGTTGCAATTTGTTCAGACAGGAGAAATTGAAGTTCATGAAAAATCCAAACGATCTGAAAGTTCCTCCTTTTTTGGGGAAACTCCTGTTTATGACAGCTCTGAAGGCTCTGGTGTTTATGAGTCACCTCCCAGTGAAGAATCCTATGCCTATGAATCTACTGAACGTCAGAGCTATGAAACATATGAAGATTCTGAACTGTGA

Predicted protein sequences of Glyma10g28830

Limit To All Plant Sequences

>Glyma10g28830.1   sequence type=predicted peptide   gene model=Glyma10g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFESRRLHLLISVVAIIALSFTAEKCRELVGEEGSSQSGKFTILNCFDMGSGTVACAVKEGVKLYFYNIRSSHAERARSQAIESALVDAVTQGMSPTDSAKHAQKEGKKAAKLASRQAKRIIGPIISSGWDFFEAIYYGGTVTEGFLRGTGTLFGTYAGGFLGEQRLGRIGYLLGSHLGSWVGGRIGLMVYDVVNGVHLLLQFVQTGEIEVHEKSKRSESSSFFGETPVYDSSEGSGVYESPPSEESYAYESTERQSYETYEDSEL*

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